Software


HARE: A Python workflow for analyzing genomic feature enrichment in GWAS datasets

This software identifies the genes and genomic features associated with autosomal genome-wide significant positions based on GWAS summary statistics for a given phenotype. It then tests for elevated intersections between the phenotype-associated features and the elements of interest (e.g. HARs) based on a simulated background distribution.

AMDirT: Ancient Metagenome Directory Toolkit

AMDir is a community-curated resource of published shotgun-sequenced ancient metagenome or microbial genome-level enriched samples and libraries. The project is overseen by the SPAAM (Standards, Precautions, and Advances in Ancient Metagenomics) community. Community members contribute to the project through maintenance of the database and user testing.